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张子龙 的个人主页
  • 张子龙
  1. 学历职称:博士/副教授
  2. 导师类型:硕/博士生导师
  3. 联系方式:zhangzilong@hainanu.edu.cn
个人简介 科研项目 发表论文 获奖情况

发表论文

In Progress

1. Chaorui Yan, Feifei Cui, Quan Zou, Zilong Zhang*. Integration Tool for scRNA-seq Data and Spatial Transcriptomics Sequencing Data. (Major revision)

2. Yunyun Su, Shiyu Yan, Chen Cao, Feifei Cui, Quan Zou, Zilong Zhang*. Human-Spa: An Online Platform Based on Spatial Transcriptome Data for Diseases of Human Systems. (Under review)

3. Hao duan, Xiuhao Fu, Chunling Liu, Xiaofeng Zang, Anqi Xu, Xingfeng Li, Qingchen Zhang, Zilong Zhang, Feifei Cui*. Machine learning-based prediction model for distant metastasis of breast cancer.  (Under review)

4. Xiuhao Fu, Hao duan, Xiaofeng Zang, Chunling Liu, Xingfeng Li, Qingchen Zhang, Zilong Zhang, Quan Zou, Feifei Cui*. Hyb_SEnc: An Antituberculosis Peptide Predictor Based on a Hybrid Feature Vector and Stacked Ensemble Learning. (Under review)

5. Ruiqi Liu, Xiuhao Fu, Shankai Yan, Zilong Zhang, Feifei Cui*. AIPPT: Predicts anti-inflammatory peptides using the most characteristic subset of bases and sequences by stacking ensemble learning strategies. (Under review)

6. Xiuhao Fu, Ye Yuan, Haoye Qiu, Haodong Suo, Yingying Song, Yupeng Zhang, Lijun Dou, Zilong Zhang, Feifei Cui*. AFG-PPIS: A Protein-protein Interaction Site Predictor Based on Attention Mechanism and Graph Convolutional Networks. (Submitted)

Selected Publications

7. Zilong Zhang, Feifei Cui, Wei Su, Lijun Dou, Anqi Xu, Chen Cao, Quan Zou*. webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration. Bioinformatics. 2022, Doi: 10.1093/bioinformatics/btac350.生物信息学顶刊,IF=6.937

8. Zilong Zhang, Feifei Cui, Chunyu Wang, Lingling Zhao*, Quan Zou*. Goals and approaches for each processing step for single-cell RNA sequencing data. Briefings in Bioinformatics. 2021, 22(4): bbaa314. (中科院一区,IF=13.994TOP期刊)

9. Zilong Zhang, Feifei Cui, Chen Lin, Lingling Zhao, Chunyu Wang, Quan Zou*. Critical downstream analysis steps for single-cell RNA sequencing data. Briefings in Bioinformatics. 2021, 22(5): bbab105. (中科院一区,IF=13.994TOP期刊)

10. Zilong Zhang, Feifei Cui, Song Wu*, Quan Zou*. Single-cell RNA analysis reveals the potential risk of organ-specific cell types vulnerable to SARS-CoV-2 infections. Computers in Biology and Medicine. 2021, 140: 105092. (IF=4.589)

11. Zilong Zhang, Feifei Cui, Murong Zhou, Song Wu*, Quan Zou*, Bo Gao*. Single-cell RNA sequencing analysis identifies key genes in brain metastasis from lung adenocarcinoma. Current Gene Therapy. 2021, 21(4): 338-48.IF=4.391

12. Lijun Dou, Zilong Zhang, Lei Xu, Quan Zou. iKcr_CNN: A novel computational tool for imbalance classification of human nonhistone crotonylation sites based on convolutional neural networks with focal loss. Computational and Structural Biotechnology Journal. 2022, 20:3268-3279. (IF=7.271)

13. Feifei Cui, Zilong Zhang, Quan Zou*. Sequence representation approaches for sequence-based protein prediction tasks that use deep learning. Briefings in Functional Genomics. 2021, 20(1): 61-73. (IF=4.241)

14. Feifei Cui, Zilong Zhang, Chen Cao, Quan Zou, Dong Chen*, Xi Su*. Protein-DNA/RNA interactions: Machine intelligence tools and approaches in the era of artificial intelligence and big data. Proteomics. 2022, 3: e2100197. Doi: 10.1002/pmic.202100197. (IF=4.044)

15. Chen Cao, Jianhau Wang, Devin Kwok, Feifei Cui, Zilong Zhang, Da Zhao, Mulin Jun Li, Quan Zou*. webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study. Nucleic acids research. 2022, 50(D1): D1123-D1130. (中科院分区一区,IF=16.971TOP期刊)

16. Kunsen Lin, Youcai Zhao, Jia-Hong Kuo, Hao Deng, Feifei Cui, Zilong Zhang, Meilan Zhang, Chunlong Zhao, Xiaofeng Gao*, Tao Zhou*, Tao Wang*. Toward smarter management and recovery of municipal solid waste: A critical review on deep learning approaches. Journal of Cleaner Production, 2022: p. 130943. (中科院分区一区, IF=9.297)

17. Feifei Cui, Shuang Li, Zilong Zhang, Miaomiao Sui, Chen Cao, Abd El-Latif Hesham, Quan Zou, DeepMC-iNABP: Deep learning for multiclass identification and classification of nucleic acid-binding proteins. Computational and Structural Biotechnology Journal. 2022, 20: 2020-2028. (IF=7.271)

18. Wei Sun, Zilong Zhang, Xin liu, Shuang Zhang, Lu He, Zhe Wang, Guangshu Wang*. Terpene glycosides from the roots of Sanguisorba officinalis L. and their hemostatic activities. Molecules (Basel, Switzerland). 2012, 17(7): 7629-36. (IF=4.411)

19. Zheng Chen, Zijie Shen, Zilong Zhang, Da Zhao, Lei Xu* and Lijun Zhang*. RNA-associated co-expression network identifies novel biomarkers for digestive system cancer. Frontiers in Genetics. 2021, 12: 659788IF=4.599

20. Shuang Zhang, Xin Liu, Zilong Zhang, Lu He, Zhe Wang, Guangshu Wang*. Isolation and identification of the phenolic compounds from the roots of Sanguisorba officinalis L. and their antioxidant activities. Molecules (Basel, Switzerland). 2012, 17(12): 13917-22. (IF=4.411)




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